PD-T4-8

Contributors: Alba Herrero del Valle

Description

PD-T4-8 is composed of a single protein that contains a DUF4263 domain found in the Shedu defense system (N/A) . PD-T4-8 from Escherichia coli RCP52534.1 confers resistance against T2, T4, T6, SECphi18 and SECphi27.

Molecular mechanisms

As far as we are aware, the molecular mechanism is unknown.

Example of genomic structure

The PD-T4-8 is composed of 1 protein: PD-T4-8.

Here is an example found in the RefSeq database:

The PD-T4-8 system in Algoriphagus sp. Y33 (GCF_014838715.1, NZ_CP061947) is composed of 1 protein: PD-T4-8 (WP_144603961.1)

Distribution of the system among prokaryotes

Among the NaN complete genomes of RefSeq, the PD-T4-8 is detected in NaN genomes (NaN %). The system was detected in NaN different species.
phylum
Percent genome having the system
0
100
Minimum genomes count to display

Structure

Summary
Group
Structure
System
Gene name
Subtype
Proteins in structure
System genes
Prediction type
N genes in sys
pLDDT
iptm+ptm
pDockQ
No data available
Items per page:
10
0-0 of 0

Experimental validation

      
graph LR;
    Vassallo_2022[Vassallo et al., 2022] --> Origin_0
    Origin_0[Escherichia coli 
RCP52534.1] --> Expressed_0[Escherichia coli]
    Expressed_0[Escherichia coli] ----> T2 & T4 & T6 & SECphi18 & SECphi27
    subgraph Title1[Reference]
        Vassallo_2022
end
    subgraph Title2[System origin]
        Origin_0
end
    subgraph Title3[Expression species]
        Expressed_0
end
    subgraph Title4[Protects against]
        T2
        T4
        T6
        SECphi18
        SECphi27
end
    style Title1 fill:none,stroke:none,stroke-width:none
    style Title2 fill:none,stroke:none,stroke-width:none
    style Title3 fill:none,stroke:none,stroke-width:none
    style Title4 fill:none,stroke:none,stroke-width:none
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