SspBCDE

Example of genomic structure

The SspBCDE is composed of 7 proteins: SspB, SspC, SspD, SspE, SspF, SspG and SspH.

Here is an example found in the RefSeq database:

The SspBCDE system in Vibrio fluvialis (GCF_018140575.1, NZ_CP073273) is composed of 6 proteins SspB (WP_050492436.1) SspC (WP_212571168.1) SspD (WP_032481030.1) SspF (WP_212571169.1) SspG (WP_212571170.1) SspH (WP_212571171.1)

Distribution of the system among prokaryotes

Among the NaN complete genomes of RefSeq, the SspBCDE is detected in NaN genomes (NaN %). The system was detected in NaN different species.
phylum
Percent genome having the system
0
100
Minimum genomes count to display

Structure

Summary
Group
Structure
Foldseek
System
Gene name
Subtype
Proteins in structure
System genes
Prediction type
N genes in sys
pLDDT
iptm+ptm
pDockQ
No data available
Items per page:
10
0-0 of 0

Experimental validation

      
graph LR;
    Xiong_2020[Xiong et al., 2020] --> Origin_0
    Origin_0[ SspABCD+SspE
Vibrio cyclitrophicus 
WP_022570853.1, WP_016789109.1,
WP_016789110.1, WP_016789111.1,
WP_016789113.1, WP_016789114.1] --> Expressed_0[Escherichia coli]
    Expressed_0[Escherichia coli] ----> T4 & T1 & JMPW1 & JMPW2 & EEP & T7
    Xiong_2020[Xiong et al., 2020] --> Origin_1
    Origin_1[ SspBCD+SspE
Escherichia coli 
WP_000429341.1, WP_000928407.1,
WP_000840786.1, WP_001424009.1] --> Expressed_1[Escherichia coli]
    Expressed_1[Escherichia coli] ----> T4 & T1 & JMPW1 & JMPW2 & EEP & T7 & PhiX174
    Xiong_2020[Xiong et al., 2020] --> Origin_2
    Origin_2[ SspBCD+SspE
Streptomyces yokosukanensis
WP_067135675.1, WP_037642090.1,
WP_208614377.1, WP_067135521.1,
WP_067135523.1] --> Expressed_2[Streptomyces lividans]
    Expressed_2[Streptomyces lividans] ----> JXY1
    Wang_2021[Wang et al., 2021] --> Origin_3
    Origin_3[ SspBCD+SspFGH
Vibrio anguillarum 
WP_022570853.1, WP_016789109.1,
WP_016789110.1, WP_016789111.1,
WP_017048669.1, ,
WP_017048667.1, WP_017048666.1,
WP_017048665.1, WP_017048664.1] --> Expressed_3[Escherichia coli]
    Expressed_3[Escherichia coli] ----> T1 & JMPW2 & T4 & EEP
    subgraph Title1[Reference]
        Xiong_2020
        Wang_2021
end
    subgraph Title2[System origin]
        Origin_0
        Origin_1
        Origin_2
        Origin_3
end
    subgraph Title3[Expression species]
        Expressed_0
        Expressed_1
        Expressed_2
        Expressed_3
end
    subgraph Title4[Protects against]
        T4
        T1
        JMPW1
        JMPW2
        EEP
        T7
        T4
        T1
        JMPW1
        JMPW2
        EEP
        T7
        PhiX174
        JXY1
        T1
        JMPW2
        T4
        EEP
end
    style Title1 fill:none,stroke:none,stroke-width:none
    style Title2 fill:none,stroke:none,stroke-width:none
    style Title3 fill:none,stroke:none,stroke-width:none
    style Title4 fill:none,stroke:none,stroke-width:none
Edit on gitlab
SpbK
Stk2