Thoeris

Contributors: Marie Guillaume, Helena Shomar, Florian Tesson

Description

Thoeris is a two-gene defense system identified in more than 2000 bacterial genomes. It consists of the genes ThsA and thsB. Its anti-phage function was experimentally validated in Bacillus subtilis (N/A) . In response to phage infection, it produces an isomer of cyclic ADP-ribose, which leads to the depletion of NAD+ and results in abortive infection.

ThsA contains the sirtuin-like domain which binds to nicotinamide adenine dinucleotide (NAD) metabolites. The N112A point mutation neutralizes the Thoeris defense system and abolishes the NAD+ hydrolase activity of thsA (N/A) . It lacks a N-terminal transmembrane domain and is predicted to be cytoplasmic.

ThsB contains a TIR domain (N/A) is proposed to participate in the recognition of phage infection, as various thsB proteins sense different phage components.ThsB is found in more than 50% of Thoeris systems in multiple diverse copies (N/A) .

Molecular mechanism

The Thoeris system functions by degrading NAD+ (a cofactor of central metabolism) to stop the growth of phage-infected cells and prevent the transmission of the phage to neighboring bacteria (N/A) .

The protein ThsB, featuring the TIR domain, plays a crucial role in identifying phage invasion. Upon detecting the infection, the TIR domain becomes enzymatically active, initiating the synthesis of a cADPR isomer molecule (N/A) . This molecule acts as a signal, binding to the ThsA effector, likely through its C-terminal SLOG domain, thereby activating its NADase activity (N/A) . Consequently, the NADase effector reduces NAD+ cellular levels, creating an environment unsuitable for phage replication (N/A, N/A) .

Example of genomic structure

The Thoeris is composed of 2 proteins: ThsA and ThsB.

Here is an example found in the RefSeq database:

The Thoeris_I system in Sneathia vaginalis (GCF_000973085.1, NZ_CP011280) is composed of 4 proteins ThsA_new_grand (WP_046328157.1) ThsB_Global (WP_046328158.1) ThsB_Global (WP_052727636.1) ThsB_Global (WP_046328159.1)

Distribution of the system among prokaryotes

Among the NaN complete genomes of RefSeq, the Thoeris is detected in NaN genomes (NaN %). The system was detected in NaN different species.
phylum
Percent genome having the system
0
100
Minimum genomes count to display

Structure

Summary
Group
Structure
Foldseek
System
Gene name
Subtype
Proteins in structure
System genes
Prediction type
N genes in sys
pLDDT
iptm+ptm
pDockQ
No data available

Experimental validation

      
graph LR;
    Doron_2018[Doron et al., 2018] --> Origin_0
    Origin_0[Bacillus amyloliquefaciens 
AFJ62118.1, AFJ62119.1] --> Expressed_0[Bacillus subtilis]
    Expressed_0[Bacillus subtilis] ----> SPO1 & SBSphiJ & SBSphiC
    Doron_2018[Doron et al., 2018] --> Origin_1
    Ofir_2021[Ofir et al., 2021] --> Origin_1
    Origin_1[Bacillus cereus 
EJR09241.1, EJR09240.1] --> Expressed_1[Bacillus subtilis]
    Expressed_1[Bacillus subtilis] ----> phi29 & SBSphiC & SPO1 & SBSphiJ
    Ofir_2021[Ofir et al., 2021] --> Origin_2
    Origin_2[Bacillus dafuensis 
WP_057775117.1, WP_057775115.1,
WP_057775113.1] --> Expressed_2[Bacillus subtilis]
    Expressed_2[Bacillus subtilis] ----> phi3T & SPBeta & SPR & SBSphi11 & SBSphi13 & phi29 & SBSphiJ & SPO1
    subgraph Title1[Reference]
        Doron_2018
        Ofir_2021
end
    subgraph Title2[System origin]
        Origin_0
        Origin_1
        Origin_1
        Origin_2
end
    subgraph Title3[Expression species]
        Expressed_0
        Expressed_1
        Expressed_1
        Expressed_2
end
    subgraph Title4[Protects against]
        SPO1
        SBSphiJ
        SBSphiC
        phi29
        SBSphiC
        SPO1
        SBSphiJ
        phi29
        SBSphiC
        SPO1
        SBSphiJ
        phi3T
        SPBeta
        SPR
        SBSphi11
        SBSphi13
        phi29
        SBSphiJ
        SPO1
end
    style Title1 fill:none,stroke:none,stroke-width:none
    style Title2 fill:none,stroke:none,stroke-width:none
    style Title3 fill:none,stroke:none,stroke-width:none
    style Title4 fill:none,stroke:none,stroke-width:none