Panchino_gp28

Contributors: Lucas Paoli

Description

The Panchino gp28 defense system was described in (N/A) and is named after the Panchino prophage (on which it is located) and the corresponding gene. It is a single-gene system.

Molecular mechanisms

Panchino gp28 acts as a single gene type I restriction system (N/A, N/A) .

Example of genomic structure

The Panchino_gp28 is composed of 1 protein: gp28.

Here is an example found in the RefSeq database:

The Panchino_gp28 system in Burkholderia pseudomallei (GCF_018228585.1, NZ_CP073731) is composed of 1 protein: gp28 (WP_249212015.1)

Distribution of the system among prokaryotes

Among the NaN complete genomes of RefSeq, the Panchino_gp28 is detected in NaN genomes (NaN %). The system was detected in NaN different species.
phylum
Percent genome having the system
0
100
Minimum genomes count to display

Structure

Summary
Group
Structure
System
Gene name
Subtype
Proteins in structure
System genes
Prediction type
N genes in sys
pLDDT
iptm+ptm
pDockQ
No data available
Items per page:
10
0-0 of 0

Experimental validation

      
graph LR;
    Dedrick_2017[Dedrick et al., 2017] --> Origin_0
    Origin_0[Mycobacterium Panchino phage 
YP_009304936.1] --> Expressed_0[Mycobacterium smegmatis mc2 155]
    Expressed_0[Mycobacterium smegmatis mc2 155] ----> Tweety & TM4 & Bruita & U2 & 244
    subgraph Title1[Reference]
        Dedrick_2017
end
    subgraph Title2[System origin]
        Origin_0
end
    subgraph Title3[Expression species]
        Expressed_0
end
    subgraph Title4[Protects against]
        Tweety
        TM4
        Bruita
        U2
        244
end
    style Title1 fill:none,stroke:none,stroke-width:none
    style Title2 fill:none,stroke:none,stroke-width:none
    style Title3 fill:none,stroke:none,stroke-width:none
    style Title4 fill:none,stroke:none,stroke-width:none
Edit on gitlab
pAgo
Paris